The tune has to be awful running N/A. Get it retuned with the injectors taken into consideration. Do it once you get the new engine in and be done with it. Do you have a nelson tune?
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No...I know a guy who had hp tuning software on his laptop...it came with an o2 sensor that he put in pre-cat and we made a few passes while he tuned it...he did a good job right after it was done but i'm not sure how well it's working with the application i've got now...