I ended up recalibrating the MAF to the 98 one and that problems seems to have gone away. I'm still getting the p0200 and p0300 codes though, with both 6 and 8 misfiring quite a bit. 5 and 7 are misfiring a little bit, but I'm not sure that it is enough to trip the code. I'm going to pull out the plugs and clean them up, and then make a test harness for the injectors so that I can connect both 6 an 8 to the computer without going through the original harness. Perhaps I damaged the harness when I was rewiring things. I pull a 5.3 harness out of the junkyard today, so if it turns out the stock wiring is damaged, I will replace it with the 5.3 harness.