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Timing can be affected by anything, low octane fuel, detected knock, excessive temp reading from the coolant sensor, a slow processor in the laptop that is reading the timing values, bad MAF sensor readings... pick your poison. It may be low because it hasn't "learned" your truck and driving habits yet. You need a good 100 miles on it before it knows much about the engine.
I don't know if you've noticed or not but you'll hear a lot of guys saying that their truck feels like it's getting faster every day. That is from the PCM reading the feedback and making internal adjustments.
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